Publications

Journal Articles

Y. Mohseni Behbahani, E. Laine, A. Carbone, “Deep Local Analysis deconstructs protein- protein interfaces and accurately estimates binding affinity changes upon mutation”, Proceedings on ISMB-ECCB, Bioinformatics, 2023.

Y. Mohseni Behbahani, P. Saighi, F. Corsi, E. Laine, A. Carbone, “LEVELNET to visualise, explore and compare protein-protein interaction networks”, Proteomics, 2023.

K. Tsuboyama, J. Dauparas, J. Chen, E. Laine, Y. Mohseni Behbahani, J. J. Weinstein, N. M. Mangan, S. Ovchinnikov, G. J. Rocklin, “Mega-scale experimental analysis of protein folding stability in biology and design”, Nature, 2023.

Y. Mohseni Behbahani, S. Crouzet, E. Laine, A. Carbone, “Deep Local Analysis evaluates protein docking conformations with locally oriented cubes”, Bioinformatics, 2022.

C. Dequeker, Y. Mohseni Behbahani, L. David, E. Laine, A. Carbone, “From complete cross-docking to partners identification and binding sites predictions”, PLOS Computational Biology, 18(1), 2022.

N. Sokolovska, Y. Mohseni Behbahani, “Vanishing Boosted Weights: A consistent algorithm to learn interpretable rules”, Journal of Pattern Recognition Letters, 152: 63-69, 2021.

Y. Mohseni Behbahani, B. Babaali, M. Turdalyuly, “Persian Sentences to Phoneme Sequences Conversion based on Recurrent Neural Networks”, Journal of Computer Science, De Gruyter, 2016.

Conference Papers

G. Verdon, L. David, A. de Brevern, Y. Mohseni Behbahani, “A deep learning approach for rational affinity maturation of anti-VEGF nanobodies”. Machine Learning for Structural Biology Workshop, NeurIPS, 2025.

Y. Mohseni Behbahani, E. Laine, and A. Carbone, “Deep Local Analysis estimates effects of mutations on protein-protein interactions”. Machine Learning for Structural Biology Workshop, NeurIPS, 2022.

Y. Mohseni Behbahani, E. Laine, and A. Carbone, “DLA-Ranker: Evaluating protein docking conformations with many locally oriented cubes”. Machine Learning for Structural Biology Workshop, NeurIPS, 2021.

Y. Mohseni Behbahani, B. Babaali, A. Elahi, M. Bahrani, “A Grapheme to Phoneme Conversion Method for the Persian Language using Long-Short Term Memory Cells”, 21st Annual National Conference of Computer Society of Iran, 2016.